Name:
mm0000459
Species:
Mus musculus
Cell Line:
ES-EP cells
Restriction Enzyme:
HindIII
Remark:
lox/lox cells containing lower levels of CTCF protein reduced interaction frequencies,except HS-62/60;3'HS1 severely destabilized the large chromatin loop
Primer amount:
NA
Test repetition:
NA
Reliability Level:
III
| Anchor | |||
|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand |
Hbb,3'HS1 |
7:103791497-103797677 | AGCTTCCTTTGAACATAACTTTGCACTTACTTGTTTCTG | + |
| Target | |||
| Locus2 | Fragment location | Primer sequence | Strand |
|
Hbb,LCR HS4 to HS5 |
7:103868029-103874906 | TTCAAGTTCTCATCCTTCACTG | + |
Splinter, E., et al. (2006). "CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus." Genes Dev 20(17): 2349-2354. PMID: 16951251
| ©BIG 2015, Beijing Institute of Genomics, Chinese Academy of Sciences
NO.1 Beichen West Road, Chaoyang District, Beijing 100101, China.
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