Browse Data
The Locus List of
Cell Line A549
Name | Anchor | Target | |||||||
---|---|---|---|---|---|---|---|---|---|
Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
1 | hs0000029 | TAL1,ncRNA,segment a3 | chr1:47641771-47661022 | CAACTTCTAGATCAGCGCCTTC | - | TAL1,segment 4 | chr1:47702165-47708881 | ATCTTTTCCGTGTAGCTCTTCCT | + |
2 | hs0000030 | SNAI1,ncRNA,segment a7 | chr20:48653626-48661831 | CTAGGTCAGGCCCAAAGAGA | - | SNAI1,segment s4 | chr20:48587014-48597692 | ATTGGCAAGAAGGGGAAAAT | - |
3 | hs0000031 | SNAI1,ncRNA,segment a7 | chr20:48653626-48661831 | CTAGGTCAGGCCCAAAGAGA | - | Aurka,segment E | chr20:54960992-54970163 | CAGACCTGATTCTCACCCTCTTG | - |
4 | hs0000490 | DEXI,promoter | chr16:11036502-11036868 | GGTTTGAACTGTGTTCAGTCTCTTT | - | CLEC16A,intron 19 | chr16:11198767-11198786 | GCTTCCGAAGACCAGGATAC | + |
5 | hs0000491 | CLEC16A,intron 19 | chr16:11198767-11198786 | GCTTCCGAAGACCAGGATAC | + | DEXI,promoter | chr16:11036502-11036868 | GGTTTGAACTGTGTTCAGTCTCTTT | - |
6 | hs0000626 | PTGS2,promoter,segment C1 | chr1:186649906-186650632 | TCAGATTCCTGGAGAGGAAG | - | PLA2G4A,promoter,segment T4 | chr1:186797342-186798124 | CCCAAATTCCATGAGAATCAATTC | - |
7 | hs0000627 | PTGS2,promoter,segment C1 | chr1:186649906-186650632 | TCAGATTCCTGGAGAGGAAG | - | PLA2G4A,promoter,segment T5 | chr1:186797342-186798124 | CCTACTCAGGATAAGACTTTCTC | + |
8 | hs0000628 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T5 | chr1:186797342-186798124 | CCTACTCAGGATAAGACTTTCTC | + |
9 | hs0000629 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T1 | chr1:186788627-186789079 | ACAGTGCCTACTATATGAAACAAAC | - |
10 | hs0000630 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T2 | chr1:186791785-186793735 | GTATTGCTTCCGTTGTTTAGGTC | + |
11 | hs0000631 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T3 | chr1:186797038-186797345 | GTAAGAGAGTTAGGAGAGTGAGTTC | + |
12 | hs0000632 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T4 | chr1:186797342-186798124 | CCCAAATTCCATGAGAATCAATTC | - |
13 | hs0000633 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T5 | chr1:186797342-186798124 | CCTACTCAGGATAAGACTTTCTC | + |
14 | hs0000634 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T6 | chr1:186798121-186798388 | TGAGAATCTTCAGGCTCCTC | - |
15 | hs0000635 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T7 | chr1:186802438-186804414 | GTAAACTGGGATGTTCACCC | + |
16 | hs0000636 | PTGS2,promoter,segment C2 | chr1:186649906-186650632 | TCCCTGATGCGTGGATTATTT | + | PLA2G4A,promoter,segment T8 | chr1:186808004-186809540 | GAAAGATTTATGTCAGGGTGAAGAA | - |
17 | hs0000788 | MUC2,promoter | chr11:1064547-1067231 | ACTCGATTATGCACAGATG | - | MUC5AC | chr11:72308931-72322821 | CCTTCCACTCACCTTCAC | - |
18 | hs0000789 | MUC2,promoter | chr11:1064547-1067231 | ACTCGATTATGCACAGATG | - | MUC5B | chr11:1242250-1247558 | TCTCCCTTTGTTCTTTGTG | - |
19 | hs0000792 | TERT,promoter | NA | CTCCCTGCTGCGCAGCCAC | NA | TERT,enhancer | chr5:1301284-1301713 | CGTCTAACAACAGTAACTTCCACTGTTC | + |
20 | hs0000815 | DEXI,promoter | chr16:11036502-11036868 | GGTTTGAACTGTGTTCAGTCTCTTT | - | CLEC16A,intron 19 | chr16:11198767-11198786 | GCTTCCGAAGACCAGGATAC | + |