Browse Data
The Locus List of
Cell Line HCT116
| Name | Anchor | Target | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
| 1 |
hs0000007 |
MYC |
chr8:128757028-128761141 | CTGTCACATTCTTCCAGCTGG | - |
MYC |
chr8:128748252-128748588 | TGTAGTAATTCCAGCGAGAGGC | + |
| 2 | hs0000008 |
MYC,segment ×3 |
NA | CCAGGTAGGTCTCCATCTCC | NA |
MYC,segment ×1 |
chr8:128742461-128749500 | CTCACCGCATTTCTGACAGC | + |
| 3 |
hs0000080 |
VEGFA,segment 5,TBE1 |
chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + |
VEGFA,segment 8 |
chr6:43739854-43742425 | TATTTGGAGAAGGAGTCGTGCG | + |
| 4 |
hs0000081 |
VEGFA,segment 5,TBE1 |
chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + |
VEGFA,segment 12 |
chr6:43753473-43756368 | ACTGGCTGTCCTCTCTTCCTGG | + |
| 5 |
hs0000082 |
VEGFA,segment 5,TBE1 |
chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + |
VEGFA,segment 14 |
chr6:43758342-43762743 | CTCTCTGATTAGCCCGTGTGC | + |
| 6 |
hs0000496 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 2 |
chr8:128226854-128233035 | TCCAGAATCTTGTTAGAACTTGG | - |
| 7 |
hs0000497 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 4 |
chr8:128235179-128236036 | ACTCAGGAGCTTAAGCATGT | - |
| 8 |
hs0000498 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 6 |
chr8:128241342-128243618 | AGAAGCTGCACATAAGATGCTA | - |
| 9 |
hs0000499 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 7 |
chr8:128243613-128246233 | ATTTCAGTTAACCCTCAGAGCA | - |
| 10 |
hs0000500 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 8 |
chr8:128246228-128252155 | ATGGCCTGTCTATGACATGA | - |
| 11 | hs0000501 |
MYC,enhancer |
chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + |
CARLo-5,segment 9 |
NA | TGAGCTCAAGTGATCCTTCT | NA |
| 12 |
hs0000530 |
MYC,promoter |
chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - |
MYC,enhancer,segment A |
chr8:128226126-128226838 | TCTGTGGTTTTGATTGGAGAAA | - |
| 13 |
hs0000531 |
MYC,promoter |
chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - |
MYC,enhancer,segment C |
chr8:128235179-128236036 | CCATTTGAGGGTGGAAGAGC | - |
| 14 |
hs0000532 |
MYC,promoter |
chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - |
MYC,enhancer,segment D |
chr8:128256948-128263221 | GCACAGACGAGGAGCAGTC | - |
| 15 |
hs0000533 |
MYC,promoter |
chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - |
MYC,enhancer,segment B |
chr8:128233030-128235184 | TTCCCAGTCTTTTCATCTGCT | - |
| 16 |
hs0000534 |
MYC,promoter |
chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - |
MYC,enhancer,segment E |
chr8:128226854-128233035 | TCAGAGGAAAAACACAGACACC | - |
| 17 |
hs0000849 |
BUB1B |
chr15:40407242-40409694 | CCCAGCCTTAAATGACCAAC | + |
BUB1B,promoter |
chr15:40450115-40453909 | TGTTAATGCTGCCTTACGTG | + |
| 18 |
hs0000852 |
MYC,promoter |
chr8:128745990-128756984 | hMyc3C-5’: GCCAAACCAAATACCCATCACCTTC/hMyc3C-3’ :GTGGTTCAGAGGTGACTATTCAACCG | - |
MYC,rs6983268 |
chr8:128413010-128414109 | rs267-3C-5’:GACACCAAGAGGGAGGTATCAACAG/rs267-3C-3’:CTAATTCCCAGTCTAGTGCCCTCTG | - |