Browse Data
The Locus List of
Cell Line BCBL-1
Name | Anchor | Target | |||||||
---|---|---|---|---|---|---|---|---|---|
Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
1 | her0000001 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 69163,upstream of ORF50 segment | chr:69143-69163 | KSHV_69143-69163-R:AAGTGGTGATCTTAGGCCAGG | - |
2 | her0000002 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 111415F,CTCF | chr:111415-111435 | KSHV_111415-111435-F: CCTTGAACGCTCGAATCACGC | + |
3 | her0000003 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 130130F,CTCF | chr:130130-130150 | KSHV 130130-130150-F:TGTTGCTGTGGTGCTGCTGTT | NA |
4 | her0000004 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,133,164R,CTCF | chr:133144-133164 | KSHV 133144-133164-R:GACCGGCCTGGAGCTGTTTGT | NA |
5 | her0000005 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 111,480,3' end of the latency transcript segment | NA | NA | NA |
6 | her0000006 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 69036,CTCF | chr:69036-69056 | KSHV 69036-69056-F: GACGGAAGCCTCTAGCTCTCT | NA |
7 | her0000007 | KSHV,site 129211,CTCF | chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + | KSHV,site 72818,CTCF | chr:72818-72838 | KSHV_72818-72838-F: TCTCGAATGAGGACCAAAGGC | NA |