Browse Data
The Locus List of
Species Gallus gallus
Name | Anchor | Target | |||||||
---|---|---|---|---|---|---|---|---|---|
Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
1 | gg0000001 | SHOX,promoter | chr1:129100252-129102045 | CTAAGCAAGCAGCACTTAGG | + | SHOX,ECS4/CNE9,segment R13 | chr1:129100252-129102045 | AGTTCTGTGCTGTGTAACCAC | + |
2 | gg0000002 | SHOX,promoter | chr1:129100252-129102045 | CTAAGCAAGCAGCACTTAGG | + | SHOX,ECR1,segment R5 | chr1:129100252-129102045 | GTTGGACACCAGAAGCATAG | + |
3 | gg0000003 | SHOX,promoter | chr1:129100252-129102045 | CTAAGCAAGCAGCACTTAGG | + | SHOX,ECR1,segment R6 | chr1:129100252-129102045 | CTTGTTCCAGTTCTCCTCAG | + |
4 | gg0000004 | HBA,major regulatory element (MRE) | chr14:12068467-12071137 | CTTTTGAAGCCAATGTCTCTC | + | HBA,erythroid-specific enhancer,-1 kb segment | chr14:12068467-12071137 | TGCCAAGCACTGGTAAGAG | + |
5 | gg0000005 | HBA,major regulatory element (MRE) | chr14:12068467-12071137 | CTTTTGAAGCCAATGTCTCTC | + | HBA,DHS-9 | chr14:12068467-12071137 | GCGATATTGAATGTTCTCTAGG | + |
6 | gg0000006 | HBA,major regulatory element (MRE) | chr14:12068467-12071137 | CTTTTGAAGCCAATGTCTCTC | + | CGTHBA,promoter | chr14:12068467-12071137 | TTCACAGCACAAGGGATAACT | + |
7 | gg0000007 | HBA,major regulatory element (MRE) | chr14:12068467-12071137 | CTTTTGAAGCCAATGTCTCTC | + | HBAD,promoter | chr14:12068467-12071137 | ATGCCTACAACCTGCGTG | + |
8 | gg0000008 | HBA,DHS-9 | chr14:12081407-12081818 | GCGATATTGAATGTTCTCTAGG | + | CGTHBA,promoter | chr14:12081407-12081818 | TTCACAGCACAAGGGATAACT | + |
9 | gg0000009 | HBA,DHS-9 | chr14:12081407-12081818 | GCGATATTGAATGTTCTCTAGG | + | HBAD,promoter | chr14:12081407-12081818 | ATGCCTACAACCTGCGTG | + |
10 | gg0000010 | HBA,DHS-9 | chr14:12081407-12081818 | GCGATATTGAATGTTCTCTAGG | + | HBA,erythroid-specific enhancer,-1 kb segment | chr14:12081407-12081818 | TGCCAAGCACTGGTAAGAG | + |
11 | gg0000011 | CGTHBA,promoter | chr14:12089653-12090073 | TTCACAGCACAAGGGATAACT | + | HBAD,promoter | chr14:12089653-12090073 | ATGCCTACAACCTGCGTG | + |
12 | gg0000012 | CGTHBA,promoter | chr14:12088174-12090594 | TTCACAGCACAAGGGATAACT | + | HBA,erythroid-specific enhancer,-1 kb segment | chr14:12088174-12090594 | TGCCAAGCACTGGTAAGAG | + |
13 | gg0000013 | HBAD,promoter | chr14:12091694-12098650 | ATGCCTACAACCTGCGTG | - | HBA,erythroid-specific enhancer,-1 kb segment | chr14:12088174-12090594 | TGCCAAGCACTGGTAAGAG | + |
14 | gg0000014 | HBAD,promoter | chr14:12091694-12098650 | ATGCCTACAACCTGCGTG | - | HBAA | chr14:12091677-12098667 | AGCCAAATGAGATGAAATAAAA | + |
15 | gg0000015 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb ρ,promoter | chr1:193715017-193716183 | AGGGAGACTACGAATGCTGC | + |
16 | gg0000016 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb A,upstream | chr1:193724348-193724624 | AGCCCCACTGCCATCCTT | + |
17 | gg0000017 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb-v,enhancer | chr1:193724619-193726879 | CTATCAAGACTTGCACAGACCTT | + |
18 | gg0000018 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb,insulator,HS4 | chr1:193703250-193707185 | GAGAATCGGGTGCAGGCTT | + |
19 | gg0000019 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb,insulator,3'HS | chr1:193729616-193737913 | GGGCATTTCTACAGAGAGCAA | + |
20 | gg0000020 | Hbb,LCR HS2 | chr1:193709740-193710997 | CACCGTCAGCATACATTGCT | + | Hbb-bh1,promoter | chr1:193723388-193724353 | CTGAGCCCCACCCTGATG | + |