Browse Data
The Locus List of
Species Herpesviru
| Name | Anchor | Target | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
| 1 | her0000001 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 69163,upstream of ORF50 segment |
chr:69143-69163 | KSHV_69143-69163-R:AAGTGGTGATCTTAGGCCAGG | - |
| 2 | her0000002 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 111415F,CTCF |
chr:111415-111435 | KSHV_111415-111435-F: CCTTGAACGCTCGAATCACGC | + |
| 3 | her0000003 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 130130F,CTCF |
chr:130130-130150 | KSHV 130130-130150-F:TGTTGCTGTGGTGCTGCTGTT | NA |
| 4 | her0000004 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,133,164R,CTCF |
chr:133144-133164 | KSHV 133144-133164-R:GACCGGCCTGGAGCTGTTTGT | NA |
| 5 | her0000005 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 111,480,3' end of the latency transcript segment |
NA | NA | NA |
| 6 | her0000006 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 69036,CTCF |
chr:69036-69056 | KSHV 69036-69056-F: GACGGAAGCCTCTAGCTCTCT | NA |
| 7 | her0000007 |
KSHV,site 129211,CTCF |
chr:129180-129200 | TAGGACAGAAAGGTCACCTGG | + |
KSHV,site 72818,CTCF |
chr:72818-72838 | KSHV_72818-72838-F: TCTCGAATGAGGACCAAAGGC | NA |