Browse Data
The Locus List of
Restriction Enzyme NcoI
| Name | Anchor | Target | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
| 1 |
hs0000025 |
CIITA,promoter,segment pIV,IFNg |
chr16:10972352-10977879 | GTGAAAGTGGCAAACCACCT | - |
CIITA,-50kb segment, STAT1 |
chr16:10921880-10930719 | CGGCTAGGTCACTTTCTCTA | - |
| 2 |
hs0000026 |
CIITA,-8kb segmtn, IRF1 |
chr16:10960422-10965212 | CAACGTGCATGGTGGAAAGA | + |
CIITA,promoter ,segment pIV,IFNg |
chr16:10972352-10977879 | GCCCCTGAGATGAGCTAACT | - |
| 3 |
hs0000027 |
CIITA, +59kb segment,IRF1 |
chr16:11027443-11033290 | AATGGGATTGTGTCATCTCCTGCCTAG | + |
CIITA,-50kb segment, STAT1 |
chr16:10921880-10930719 | CGGCTAGGTCACTTTCTCTAGTAGGGA | - |
| 4 |
hs0000028 |
CIITA, +59kb segment,IRF1 |
chr16:11027443-11033290 | ATGGGATTGTGTCATCTCCTGCCTAGA | + |
CIITA,-8kb segmtn, IRF1 |
chr16:10960422-10965212 | GTGCATGGTGGAAAGATGACTGTAAGT | + |
| 5 |
hs0000155 |
CCND1,sement B1 |
chr11:69448149-69456085 | TAGCAGCGAGCAGCAGAGT | + |
CCND1,sement F1 |
chr11:69468299-69471413 | TCACAGGCGCAGGGAAG | - |
| 6 |
hs0000736 |
HBA2 |
chr:162627-168148 | GGGGAGACACTGAGAATAGG | - |
HBA,HS40 |
chr16:162627-168148 | TAACCTGTCCCGTCGTATCGCC | - |
| 7 |
hs0000737 |
HBA,HS40 |
chr16:162627-168148 | TAACCTGTCCCGTCGTATCGCC | - |
HBA1 |
chr16:226714-231327 | AGGAGCAGCCTTCTTGCCGTG | + |
| 8 |
hs0000738 |
HBA2 |
chr:162627-168148 | GGGGAGACACTGAGAATAGG | NA |
HBA,HS33 |
chr16:168143-174186 | GCATTACTAAGATTCTGAAGGGTCG | - |
| 9 |
hs0000774 |
CIITA,-50kb segment,STAT1 |
chr16:10972352-10977879 | GTGAAAGTGGCAAACCACCT | - |
CIITA,promoter,segment pIV,IFNg |
chr16:10921880-10930719 | CGGCTAGGTCACTTTCTCTA | - |
| 10 |
hs0000775 |
CIITA,-8kb segment,IRF1 |
chr16:10960422-10965212 | CAACGTGCATGGTGGAAAGA | + |
CIITA,promoter,segment pIV,IFNg |
chr16:10972352-10977879 | GCCCCTGAGATGAGCTAACT | - |
| 11 |
hs0000776 |
CIITA,-50kb segment,STAT1 |
chr16:11027443-11033290 | AATGGGATTGTGTCATCTCCTGCCTAG | + |
CIITA,+59kb segment,IRF1 |
chr16:10921880-10930719 | CGGCTAGGTCACTTTCTCTAGTAGGGA | - |
| 12 |
hs0000777 |
CIITA,-8kb segment,IRF1 |
chr16:11027443-11033290 | ATGGGATTGTGTCATCTCCTGCCTAGA | + |
CIITA,+59kb segment,IRF1 |
chr16:10960422-10965212 | GTGCATGGTGGAAAGATGACTGTAAGT | + |
| 13 | mm0000180 |
IgH,promoter |
NA | CTGGGATGTCCACACCCTGAAAA | NA |
IgH,HS1,HS2 |
chr12:113244558-113246539 | GTCCCTACAGTGTCTGGATGCT | + |
| 14 | mm0000181 |
IgH,promoter |
NA | CTGGGATGTCCACACCCTGAAAA | NA |
IgH,HS3B |
chr12:113233917-113236988 | CTGTTCCAAACCTCAATCCCATGTA | NA |
| 15 | mm0000182 |
IgH,promoter |
NA | CTGGGATGTCCACACCCTGAAAA | NA |
IgH,HS4 |
chr12:113228894-113231026 | AGTCATGGCCTTTGCCCTTAGA | + |
| 16 | mm0000372 |
Cdkn1c,promoter |
NA | NA | NA |
Cdkn1c,DMR1 |
NA | NA | NA |
| 17 |
mm0000463 |
MCP1,distal enhancer |
chr11:82032544-82034231 | ATGGCATCTCTCAACTTGTTCA | + |
MCP1,proximal regulatory |
chr11:82034720-82041921 | CCTGGCTATCATCACATTACCTTC | - |
| 18 |
mm0000565 |
Ptgs2,5' end,segmentA |
chr1:150086772-150101599 | CTGTGTTTGTGTTGGCCATGGTC | - |
Ptgs2,3' end,segment D |
chr1:150102771-150105492 | GAGAAGGAAATGGCTGCAGAATTG | + |
| 19 |
mm0000572 |
Hba-a2,segment XVII |
chr11:32280779-32282977 | TGGAGGATGCGGCAGTTAGTG | - |
Hba,HS26,segment VIII |
chr11:32250517-32252006 | TCATAATAGGTGGGTGGAATCAG | - |
| 20 |
mm0000573 |
Hba-a1,segment XV |
chr11:32280779-32282977 | TGGAGGATGCGGCAGTTAGTG | - |
Hba,HS21,segment IX |
chr11:32254319-32258575 | GGTATGGACTTGGTTCTGTAGC | - |