Browse Data
The Locus List of
Cell Line HCT116
Name | Anchor | Target | |||||||
---|---|---|---|---|---|---|---|---|---|
Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
1 | hs0000007 | MYC | chr8:128757028-128761141 | CTGTCACATTCTTCCAGCTGG | - | MYC | chr8:128748252-128748588 | TGTAGTAATTCCAGCGAGAGGC | + |
2 | hs0000008 | MYC,segment ×3 | NA | CCAGGTAGGTCTCCATCTCC | NA | MYC,segment ×1 | chr8:128742461-128749500 | CTCACCGCATTTCTGACAGC | + |
3 | hs0000080 | VEGFA,segment 5,TBE1 | chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + | VEGFA,segment 8 | chr6:43739854-43742425 | TATTTGGAGAAGGAGTCGTGCG | + |
4 | hs0000081 | VEGFA,segment 5,TBE1 | chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + | VEGFA,segment 12 | chr6:43753473-43756368 | ACTGGCTGTCCTCTCTTCCTGG | + |
5 | hs0000082 | VEGFA,segment 5,TBE1 | chr6:43735590-43736663 | CTGTGAGCCTGGAGAAGTAGCC | + | VEGFA,segment 14 | chr6:43758342-43762743 | CTCTCTGATTAGCCCGTGTGC | + |
6 | hs0000496 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 2 | chr8:128226854-128233035 | TCCAGAATCTTGTTAGAACTTGG | - |
7 | hs0000497 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 4 | chr8:128235179-128236036 | ACTCAGGAGCTTAAGCATGT | - |
8 | hs0000498 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 6 | chr8:128241342-128243618 | AGAAGCTGCACATAAGATGCTA | - |
9 | hs0000499 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 7 | chr8:128243613-128246233 | ATTTCAGTTAACCCTCAGAGCA | - |
10 | hs0000500 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 8 | chr8:128246228-128252155 | ATGGCCTGTCTATGACATGA | - |
11 | hs0000501 | MYC,enhancer | chr8:128413010-128414109 | TGTGGTCCCTGAACTTCTAAAA | + | CARLo-5,segment 9 | NA | TGAGCTCAAGTGATCCTTCT | NA |
12 | hs0000530 | MYC,promoter | chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - | MYC,enhancer,segment A | chr8:128226126-128226838 | TCTGTGGTTTTGATTGGAGAAA | - |
13 | hs0000531 | MYC,promoter | chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - | MYC,enhancer,segment C | chr8:128235179-128236036 | CCATTTGAGGGTGGAAGAGC | - |
14 | hs0000532 | MYC,promoter | chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - | MYC,enhancer,segment D | chr8:128256948-128263221 | GCACAGACGAGGAGCAGTC | - |
15 | hs0000533 | MYC,promoter | chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - | MYC,enhancer,segment B | chr8:128233030-128235184 | TTCCCAGTCTTTTCATCTGCT | - |
16 | hs0000534 | MYC,promoter | chr8:128745990-128756984 | AGCAGCAGATACCGCCCCTCCT | - | MYC,enhancer,segment E | chr8:128226854-128233035 | TCAGAGGAAAAACACAGACACC | - |
17 | hs0000849 | BUB1B | chr15:40407242-40409694 | CCCAGCCTTAAATGACCAAC | + | BUB1B,promoter | chr15:40450115-40453909 | TGTTAATGCTGCCTTACGTG | + |
18 | hs0000852 | MYC,promoter | chr8:128745990-128756984 | hMyc3C-5’: GCCAAACCAAATACCCATCACCTTC/hMyc3C-3’ :GTGGTTCAGAGGTGACTATTCAACCG | - | MYC,rs6983268 | chr8:128413010-128414109 | rs267-3C-5’:GACACCAAGAGGGAGGTATCAACAG/rs267-3C-3’:CTAATTCCCAGTCTAGTGCCCTCTG | - |