Browse Data
The Locus List of
Cell Line embryo cells
| Name | Anchor | Target | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
| 1 | mm0000002 |
Ptrf,promoter |
NA | NA | NA |
Ptrf,enhancer |
NA | NA | NA |
| 2 |
mm0000038 |
Hbb-b1, promoter,segment e |
chr7:103827237-103828268 | AATCGCTGCTCCCCCTCACT | - |
Hbb,HS-62/HA-60,segment a |
chr7:103910574-103913162 | GGGTGTGGGTATTTGTAAGAG | + |
| 3 |
mm0000039 |
Hbb-b1, promoter,segment e |
chr7:103827237-103828268 | AATCGCTGCTCCCCCTCACT | - |
Hbb,HS-42,segment b |
chr7:103890787-103892124 | ATGAACAAGTTTCATGGGG | - |
| 4 |
mm0000040 |
Hbb-b1, promoter,segment e |
chr7:103827237-103828268 | AATCGCTGCTCCCCCTCACT | - |
Hbb,HS4/HS5,segment c |
chr7:103868029-103874906 | TTCAAGTTCTCATCCTTCACTG | + |
| 5 |
mm0000041 |
Hbb-b1, promoter,segment e |
chr7:103827237-103828268 | AATCGCTGCTCCCCCTCACT | - |
Hbb,segment d |
chr7:103828263-103829986 | AGAAGGAGATTCATCCATGCACT | - |
| 6 |
mm0000042 |
Hbb-b1, promoter,segment e |
chr7:103827237-103828268 | AATCGCTGCTCCCCCTCACT | - |
Hbb,Olfr69,segment f |
chr7:103766041-103772074 | ACTGCACTGTCTTCCAAATCACT | - |
| 7 |
mm0000043 |
Hbb-b1, promoter,segment e |
chr7:103827939-103828626 | CTGATTCCGTAGAGCCACACC | - |
Hbb,HS-62/HA-60,segment a |
chr7:103913129-103913536 | TGTAGTTCTCTAGTGTAGCCACCAG | - |
| 8 |
mm0000044 |
Hbb-b1, promoter,segment e |
chr7:103827939-103828626 | CTGATTCCGTAGAGCCACACC | - |
Hbb,HS-42,segment b |
chr7:103891364-103892385 | TAGATGCATGGTCTTAATGGTCC | + |
| 9 |
mm0000045 |
Hbb-b1, promoter,segment e |
chr7:103827939-103828626 | CTGATTCCGTAGAGCCACACC | - |
Hbb,HS4/HS5,segment c |
chr7:103873587-103874767 | TACTAATAAAAGCAAGCCATCTCG | + |
| 10 |
mm0000046 |
Hbb-b1, promoter,segment e |
chr7:103827939-103828626 | CTGATTCCGTAGAGCCACACC | - |
Hbb,segment d |
chr7:103828623-103829109 | TGAGGACTTGGTTCAGTAAATAA | - |
| 11 |
mm0000047 |
Hbb-b1, promoter,segment e |
chr7:103827939-103828626 | CTGATTCCGTAGAGCCACACC | - |
Hbb,Olfr69,segment f |
chr7:103769088-103770096 | AAAACAAGATGAGAATCGCCTG | - |
| 12 |
dm0000038 |
white,enhancer |
chrX:2786543-2801826 | F: GCGACAGGCGAGTGACAATAA/R: TTGGTTGAGTGAAGCTCGAATC | - |
white,segment 8 |
chrX:2786543-2801826 | CTGCACTGGATATCATTGAACTTA | - |
| 13 |
dm0000039 |
white,promoter |
chrX:2786543-2801826 | F: GCACTGGATATCATTGAACTTATCTG/R: TGGACAGAGAAGGAGGCAAACA | + |
white,segment 2 |
chrX:2786543-2801826 | CCCACAAAGGAAGTCTCTTAC | - |
| 14 | dm0000040 |
gypsy,insulator |
NA | F: TCGACTCTACTAGAAGGCCTAA/R: GGCATGGTGCCAATGAATC | NA |
white,segment 3 |
NA | GCTGAGTGAGACATCGAATTG | NA |
| 15 |
dm0000042 |
sog,promoter |
chrX:15630414-15633989 | TTCAGGATTGTATTGTTTGTTGAGA | + |
sog,primary enhancer |
chrX:15617774-15623137 | CAAAGGGTTTACAATGCACATCTAT | + |
| 16 |
dm0000043 |
sog,promoter |
chrX:15624991-15632888 | TTCAGGATTGTATTGTTTGTTGAGA | + |
sog,shadow enhancer |
chrX:15648129-15657484 | ATAAAAGAACATTGTAACCCCTGGA | + |
| 17 |
dm0000044 |
sog,promoter |
chrX:15624991-15632888 | TTCAGGATTGTATTGTTTGTTGAGA | + |
sog,+35.248kb segment |
chrX:15590948-15591356 | TGCATAAATAACAATACGTTTGAACA | + |
| 18 |
dm0000045 |
brk,promoter |
chrX:7303521-7306412 | GGTGGATGTGTGTATAGGTTTCTTC | + |
brk shadow enhancer |
chrX:7315382-7327337 | TTCAGGTGGCAAGTATGTATGTATG | + |
| 19 |
dm0000046 |
brk,promoter |
chrX:7299802-7305244 | GGTGGATGTGTGTATAGGTTTCTTC | + |
brk primary enhancer |
chrX:7290795-7292634 | TATCCCCCAAAAACTCACATAAAAT | + |
| 20 |
dm0000047 |
brk,promoter |
chrX:7299802-7305244 | GGTGGATGTGTGTATAGGTTTCTTC | + |
brk,segment 2L |
chrX:7290795-7292634 | TATCCCCCAAAAACTCACATAAAAT | + |