Browse Data
The Locus List of
Cell Line brain cells
| Name | Anchor | Target | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Locus1 | Fragment location | Primer sequence | Strand | Locus2 | Fragment location | Primer sequence | Strand | ||
| 1 | hs0000805 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | CTGGAGCAGGGGTTGCAAACTC | + |
PLAGL1,last exon |
NA | NA | NA |
| 2 |
hs0000806 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | CTGGAGCAGGGGTTGCAAACTC | + |
PLAGL1,3'UTR |
chr6:144255051-144260542 | CTCACAGGAGACAGTAGTAAGCC | + |
| 3 |
hs0000807 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | CTGGAGCAGGGGTTGCAAACTC | + |
PLAGL1,P3/P4 promoter |
chr6:144279993-144282468 | CTTGGCTTCTTCCTACCAAGG | + |
| 4 | hs0000808 |
PLAGL1,P3/P4 promoter |
chr6:144279993-144282468 | GAAACCAGCATTTCCGTTCACC | + |
PLAGL1,DMR,-5kb segment |
NA | NA | NA |
| 5 | hs0000809 |
PLAGL1,DMR |
chr6:144333916-144350575 | CTGGAGCAGGGGTTGCAAACTC | + |
PLAGL1,intron 1 |
NA | NA | NA |
| 6 | hs0000844 |
ADH1,segment E5,HNF1 |
NA | GAGTATGAGTTTGAGGTAAC | NA |
ADH1,promoter,segment E1 |
NA | NA | NA |
| 7 | hs0000845 |
ADH1,segment E5,HNF1 |
NA | GAGTATGAGTTTGAGGTAAC | NA |
ADH1,promoter,segment E2 |
NA | NA | NA |
| 8 | hs0000846 |
ADH1,segment E5,HNF1 |
NA | GAGTATGAGTTTGAGGTAAC | NA |
ADH1,promoter,segment E2/3 |
NA | NA | NA |
| 9 | hs0000847 |
ADH1,segment E5,HNF1 |
NA | GAGTATGAGTTTGAGGTAAC | NA |
ADH1,promoter,segment E8 |
NA | NA | NA |
| 10 | hs0000867 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | GAGTTTGCAACCCCTGCTCCAG | - |
the last PLAGL1 exon |
NA | NA | NA |
| 11 |
hs0000868 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | GAGTTTGCAACCCCTGCTCCAG | - |
3'UTR |
chr6:144255051-144260542 | CTCACAGGAGACAGTAGTAAGCC | + |
| 12 |
hs0000869 |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | GAGTTTGCAACCCCTGCTCCAG | - |
PLAGL1,promoter,P3/P4 segment |
chr6:144279993-144282468 | GAAACCAGCATTTCCGTTCACC | + |
| 13 |
hs0000873 |
PLAGL1,promoter,P3/P4 segment |
chr6:144279993-144282468 | GAAACCAGCATTTCCGTTCACC | + |
PLAGL1,DMR,-5kb segment |
chr6:144333916-144350575 | GAGTTTGCAACCCCTGCTCCAG | - |
| 14 | hs0000874 |
PLAGL1,DMR |
chr6:144333922-144333922 | GAGTTTGCAACCCCTGCTCCAG | - |
intron 1 |
NA | NA | NA |
| 15 |
hs0000875 |
PLAGL1,DMR,-5kb segment,segment C0 |
chr6:144332878-144333921 | GTTGACCTGGTAGCTGTGACAC | - |
PLAGL1,segment C1 |
chr6:144321305-144326636 | GGGACAATTACCTTTTCATGTGGG | + |
| 16 |
hs0000876 |
PLAGL1,DMR,-5kb segment,segment C0 |
chr6:144332878-144333921 | GTTGACCTGGTAGCTGTGACAC | - |
PLAGL1, segment C8 |
chr6:144279993-144326636 | CTTGGCTTCTTCCTACCAAGG | + |
| 17 |
hs0000877 |
PLAGL1,DMR,-5kb segment,segment C0 |
chr6:144332878-144333921 | GTTGACCTGGTAGCTGTGACAC | - |
PLAGL1,segment C11 |
chr6:144261216-144265091 | CCACTGTTTTGACCTCTACTGAGC | - |
| 18 |
hs0000878 |
PLAGL1,DMR,-5kb segment,segment C0 |
chr6:144332878-144333921 | GTTGACCTGGTAGCTGTGACAC | - |
PLAGL1,segment C12 |
chr6:144255051-144260542 | CTCACAGGAGACAGTAGTAAGCC | + |
| 19 |
hs0000879 |
PLAGL1,DMR,-5kb segment,segment C0 |
chr6:144332878-144333921 | GTTGACCTGGTAGCTGTGACAC | - |
PLAGL1,segment C13 |
chr6:144241190-144244584 | CCTCGTGTTGATTTGTTATCTAATCC | - |
| 20 |
mm0000385 |
Irx3,LD-block |
chr8:91374113-91375793 | TGGTCTCGGGTATCTTGTCC | + |
Irx3,promoter |
chr8:91798171-91804283 | TGATGTTGGTTCCTTACTAGG | - |